I have the same problem with my 2006 Fusion. I ripped my door apart and had my wife drive me around so I could listen for it, noise gone. I kept my door apart and took it to work the next day by myself, the noise was back. It had to be in the seat. When I drove around with my wife, I was sitting in the passenger seat. I kept looking. When you drive and hear the noise, reach over an push on the back of the passenger seat, it goes away. I then needed to know if it was in the joint between the back of the seat and the sitting part. I reached over when I was driving and just pushed down on the seat bottom, I could make it go away.
Just today, I went out with a flashlight in the garage and bumped the seatback with my hand and got the noise.
I am almost positive that the problem is the track the seat sits (and slides) on. It is not that the bolts are loose, it is just the way the track is made. I squeezed the track together as I bumped the back of the seat and I'm pretty sure I could muffle the sound. The good news (I think) is that it is the interface beween two stationary parts. I don't think it involves the sliding part but I haven't verified this yet. I might be wedging in a big nasty sheet-metal screw into that track to stop the noise. It is driving me crazy, too!!!!